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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13146878_13147159_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13146878 - 13147159
Intron Length:
282

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
GGCTCCTTACTG
Flanking Amino Acid:
NMWLEYYNLERAHGDTQHCR
Intron Amino Acid Position:
498

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
71.4
0.48
0.8
65.8
30.2
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
55.6
0.04
1.7
56.55
45.1

Associated Gene:

Gene:
SART3
Ensembl Gene ID:
ENSAPLG00000006205
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006458
13142427 - 13154274
11848