About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13147270_13147407_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13147270 - 13147407
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATGTTT
5'SS Class:
major
3'SS Sequence:
TGCTGCTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
TGCTGCTTCACA
Flanking Amino Acid:
TIMQNWARVEARLCNNMQKA
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
77.5
33.1
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
74.6
0.55
0.9
67.9
37.7
Minor 5ss
37.3
-1.4
3.5
55.5
48.6
Minor BPS
52.5
0.07
2.2
67.6
44.9

Associated Gene:

Gene:
SART3
Ensembl Gene ID:
ENSAPLG00000006205
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006458
13142427 - 13154274
11848