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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13148257_13148646_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13148257 - 13148646
Intron Length:
390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGAAA
5'SS Class:
major
3'SS Sequence:
CCGTTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTACCC
Flanking Amino Acid:
RHGVDHCIISEIFEKALNAG
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
70
35.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.7
0.71
0.8
75.6
33
Minor 5ss
31.1
-2.2
3.2
35.8
43.1
Minor BPS
65.2
0.46
1.6
74.26
36.7

Associated Gene:

Gene:
SART3
Ensembl Gene ID:
ENSAPLG00000006205
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006458
13142427 - 13154274
11848