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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13151672_13152495_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13151672 - 13152495
Intron Length:
824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTTCT
5'SS Class:
major
3'SS Sequence:
TAACCTTGTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTCTCCTAACC
Flanking Amino Acid:
LFERAVKDYICPEIWLEYAQ
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.1
70.8
35.4
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
70.1
0.45
1
61.7
43.9
Minor 5ss
40.3
-1.1
3
60.6
43.7
Minor BPS
67.8
0.54
1.7
80.63
33.4

Associated Gene:

Gene:
SART3
Ensembl Gene ID:
ENSAPLG00000006205
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006458
13142427 - 13154274
11848