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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13152601_13153255_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13152601 - 13153255
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGAGC
5'SS Class:
major
3'SS Sequence:
TTGTTGGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GGGTTTTAAACT
Flanking Amino Acid:
KMSELFPLTEEIWLDWLKDE
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68
43.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
79.7
0.67
1
76.9
42.1
Minor 5ss
31.5
-2.1
3.3
43.1
44.1
Minor BPS
55.1
0.24
1.7
68.48
42.8

Associated Gene:

Gene:
SART3
Ensembl Gene ID:
ENSAPLG00000006205
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006458
13142427 - 13154274
11848