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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13153383_13154015_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13153383 - 13154015
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
TTTTTCTTGAAG
Flanking Amino Acid:
EAEIQRLEEQLSINAFDYNC
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
84.8
0.78
0.9
87.3
23.7
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
70.3
0.49
1.5
75.29
36.5

Associated Gene:

Gene:
SART3
Ensembl Gene ID:
ENSAPLG00000006205
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006458
13142427 - 13154274
11848