About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13154593_13155188_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13154593 - 13155188
Intron Length:
596

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTGCCCCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
ACCTTTATGATT
Flanking Amino Acid:
GGPALGYHKKVVDHYENPRN
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
84.6
0.86
1
74
41.2
Major PPT
62.7
0.29
1
54.3
36.6
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
47.8
-0
1.5
60.55
37.9

Associated Gene:

Gene:
ISCU
Ensembl Gene ID:
ENSAPLG00000006183
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006400
13154506 - 13156562
2057