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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13156086_13156470_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13156086 - 13156470
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTACG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
AATAATTTAAAA
Flanking Amino Acid:
CLPPVKLHCSMLAEDAIKAA
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
69.4
41.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
38.2
-1.3
2.7
49.6
40.1
Minor BPS
52.5
0.08
1.6
62.52
36.6

Associated Gene:

Gene:
ISCU
Ensembl Gene ID:
ENSAPLG00000006183
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006400
13154506 - 13156562
2057