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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13158613_13158974_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13158613 - 13158974
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAA|GCCAGCTCT
5'SS Class:
major
3'SS Sequence:
CTGCTTTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTGCTAATTT
Flanking Amino Acid:
FLTRPSGRCWNTSPGAMAGW
Intron Amino Acid Position:
61

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.2
64.7
41.1
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.3
0.61
0.8
72.5
32.2
Minor 5ss
33.3
-1.9
4
49.1
41
Minor BPS
50.4
0.09
2.3
79.24
43.6

Associated Gene:

Gene:
TMEM119
Ensembl Gene ID:
ENSAPLG00000022467
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032730
13157889 - 13159156
1268