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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13220251_13220928_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13220251 - 13220928
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAAAGAT
U12 Branch Point Sequence:
ATAGCCAGAAAG
Flanking Amino Acid:
NEAYHFINKAKKNHSKCLVH
Intron Amino Acid Position:
382

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
69.9
41.1
Major BPS
46.8
-0.2
1.2
41.1
39.7
Major PPT
89.8
0.89
0.6
85.3
22.1
Minor 5ss
33.8
-1.8
3.2
40.5
39.9
Minor BPS
44.3
-0.5
1.9
50.43
42.7

Associated Gene:

Gene:
SSH1
Ensembl Gene ID:
ENSAPLG00000005232
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005403
13216746 - 13246319
29574