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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13221076_13222272_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13221076 - 13222272
Intron Length:
1197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTCTCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TCATCTCTAATT
Flanking Amino Acid:
ASNLEELQGSGIDYILNVTR
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.9
35.3
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
80.9
0.69
0.7
76.4
25.7
Minor 5ss
31.1
-2.2
2.6
30
35.1
Minor BPS
62.9
0.48
1.7
77.17
39.8

Associated Gene:

Gene:
SSH1
Ensembl Gene ID:
ENSAPLG00000005232
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005403
13216746 - 13246319
29574