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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13222320_13223487_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13222320 - 13223487
Intron Length:
1168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GTGGCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
ACTTATTGAAAT
Flanking Amino Acid:
PSLIFDHLYLGSEWNASNLE
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
74.9
36.2
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
69
0.43
1.1
61.4
44.5
Minor 5ss
40.7
-1
2.8
49.7
41.9
Minor BPS
50.9
0.11
1.7
69.65
40.9

Associated Gene:

Gene:
SSH1
Ensembl Gene ID:
ENSAPLG00000005232
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005403
13216746 - 13246319
29574