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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13224709_13224955_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13224709 - 13224955
Intron Length:
247

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTCAGTTCT
5'SS Class:
major
3'SS Sequence:
GCTTACTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAG
U12 Branch Point Sequence:
CTCTGCTTACTT
Flanking Amino Acid:
RPDSPALFVDKPTERERTER
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.3
75.2
35.7
Major BPS
58.8
0.22
1.6
75
40
Major PPT
79
0.65
0.9
69.3
41.4
Minor 5ss
40
-1.1
2.8
51.9
38.5
Minor BPS
51.5
0.13
2.1
70.75
46.9

Associated Gene:

Gene:
SSH1
Ensembl Gene ID:
ENSAPLG00000005232
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005403
13216746 - 13246319
29574