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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13225151_13226434_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13225151 - 13226434
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGGATG
5'SS Class:
major
3'SS Sequence:
TCCAAACTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
GTTCTCCAAACT
Flanking Amino Acid:
IFKPVSVQAMWSALQILHKA
Intron Amino Acid Position:
178

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.3
0.6
1
67.8
42.7
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
70.2
0.46
0.9
62.1
38.4
Minor 5ss
42.1
-0.9
3.1
53.6
44.9
Minor BPS
49.9
0.07
2
74.74
41.6

Associated Gene:

Gene:
SSH1
Ensembl Gene ID:
ENSAPLG00000005232
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005403
13216746 - 13246319
29574