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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13226501_13226929_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13226501 - 13226929
Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAC
U12 Branch Point Sequence:
CAGTTTGTGACT
Flanking Amino Acid:
SDTKIHLDGDGGFSVSTAGR
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
35.1
Major BPS
71.3
0.53
1.2
63.1
44.5
Major PPT
82.5
0.73
0.7
79.8
25.7
Minor 5ss
33.3
-1.9
2.9
35.7
40.8
Minor BPS
47
-0.1
2
62.22
42.8

Associated Gene:

Gene:
SSH1
Ensembl Gene ID:
ENSAPLG00000005232
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005403
13216746 - 13246319
29574