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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13226999_13229127_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13226999 - 13229127
Intron Length:
2129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTCTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
ACATCCTTAACA
Flanking Amino Acid:
LLGVDFSSKESKSCTIGMVL
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
79.7
35.3
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
86.3
0.82
0.8
77.9
35.9
Minor 5ss
43.9
-0.7
2.8
58.4
46.1
Minor BPS
80.8
0.96
1.1
78.87
37.2

Associated Gene:

Gene:
SSH1
Ensembl Gene ID:
ENSAPLG00000005232
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005403
13216746 - 13246319
29574