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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13229250_13229522_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13229250 - 13229522
Intron Length:
273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TTTTGCAGAGCT
Flanking Amino Acid:
LLRCEDRIKLAVRLESVWTD
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
76.1
32.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
83.5
0.75
0.7
77.6
36.1
Minor 5ss
33.9
-1.8
2.9
38.9
40.1
Minor BPS
47.3
-0.1
2.3
78.19
43.6

Associated Gene:

Gene:
SSH1
Ensembl Gene ID:
ENSAPLG00000005232
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005403
13216746 - 13246319
29574