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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13229588_13231278_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13229588 - 13231278
Intron Length:
1691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTCGAT
5'SS Class:
major
3'SS Sequence:
GCTCTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
AGACCTTTGATG
Flanking Amino Acid:
RSLQHPHKHAGDLPQHLQVM
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
65.1
41
Major BPS
84
0.85
0.9
75
39.9
Major PPT
79.4
0.66
0.8
73.1
31.8
Minor 5ss
36.7
-1.5
3.7
55.1
49.2
Minor BPS
52.1
-0
1.3
51.5
36.8

Associated Gene:

Gene:
SSH1
Ensembl Gene ID:
ENSAPLG00000005232
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005403
13216746 - 13246319
29574