About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13231383_13242541_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13231383 - 13242541
Intron Length:
11159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTTCCTTTGACT
Flanking Amino Acid:
GSDEERKLNVSLSESFFMVK
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
78
38.6
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
92.6
0.96
0.7
88.3
28.9
Minor 5ss
38.7
-1.3
2.8
49.1
46.7
Minor BPS
80.7
1.05
1
92.82
28.5

Associated Gene:

Gene:
SSH1
Ensembl Gene ID:
ENSAPLG00000005232
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005403
13216746 - 13246319
29574