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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13242583_13246072_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13242583 - 13246072
Intron Length:
3490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCGG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGTAAC
U12 Branch Point Sequence:
GGCGTGTAACTT
Flanking Amino Acid:
SAASSASTSELEAGSDEERK
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
59.7
46.7
Major BPS
56.8
0.17
1.4
61.4
43.2
Major PPT
82.5
0.73
0.7
77.7
24.2
Minor 5ss
31.8
-2.1
3
38.6
46.5
Minor BPS
34.2
-1.1
2.2
43.54
41.5

Associated Gene:

Gene:
SSH1
Ensembl Gene ID:
ENSAPLG00000005232
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005403
13216746 - 13246319
29574