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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13249153_13249292_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13249153 - 13249292
Intron Length:
140

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTCAG
5'SS Class:
major
3'SS Sequence:
GTTTTCCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGCCAT
U12 Branch Point Sequence:
TTTTCCCCACAG
Flanking Amino Acid:
YLSDHGELQETLWNKETFDH
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.3
64.9
42.8
Major BPS
49.9
-0
1.4
61.8
44.5
Major PPT
79.5
0.66
0.8
73.3
31.8
Minor 5ss
29.5
-2.3
2.8
31.4
35.4
Minor BPS
45.8
-0.4
2.2
62
45.2

Associated Gene:

Gene:
DAO
Ensembl Gene ID:
ENSAPLG00000018816
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027281
13248946 - 13249635
690