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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13261206_13261666_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13261206 - 13261666
Intron Length:
461

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTCC
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TATTTTGTATTT
Flanking Amino Acid:
GALITPFIAQVMLESSVYLT
Intron Amino Acid Position:
481

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
78.2
30.3
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
92.3
0.95
0.6
88.4
21.3
Minor 5ss
40.8
-1
2.8
53.7
43.5
Minor BPS
48.2
-0
2.2
71.82
40.2

Associated Gene:

Gene:
SVOP
Ensembl Gene ID:
ENSAPLG00000004265
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004386
13260999 - 13280061
19063