Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13261757_13261991_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13261757 - 13261991

Intron Length:

235

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGGAGG

5'SS Class:

strong_major

3'SS Sequence:

GCTTTGTTCACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTTAAT

U12 Branch Point Sequence:

CTTGGGTTAACA

Flanking Amino Acid:

FQAAYVYTPEVYPTATRALG

Intron Amino Acid Position:

451

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.5

0.91

0.9

73.4

43.3

Major BPS

69.2

0.48

1.3

71.9

Major PPT

77.7

0.62

0.9

71.5

38.4

Minor 5ss

31.7

-2.1

3.1

39.7

45.9

Minor BPS

47.8

-0.1

2.5

66.36

46.4

Associated Gene:

Gene:

SVOP

Ensembl Gene ID:

ENSAPLG00000004265

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004386

13260999 - 13280061

19063