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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13265386_13265715_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13265386 - 13265715
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
CCTCTCTTATTT
Flanking Amino Acid:
RWTTLLLWFIWFSNAFSYYG
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
89.5
0.89
0.6
84.7
23
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
55
0.23
1.6
68.23
43.4

Associated Gene:

Gene:
SVOP
Ensembl Gene ID:
ENSAPLG00000004265
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004386
13260999 - 13280061
19063