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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13265790_13267174_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13265790 - 13267174
Intron Length:
1385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTCAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTATTTTCAACA
Flanking Amino Acid:
PLGKLIISRQEDRGKMRDLF
Intron Amino Acid Position:
300

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
80.9
0.69
0.9
77.9
35.1
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
67
0.53
1.5
76.01
35

Associated Gene:

Gene:
SVOP
Ensembl Gene ID:
ENSAPLG00000004265
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004386
13260999 - 13280061
19063