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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13267304_13268317_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13267304 - 13268317
Intron Length:
1014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAGGTATT
5'SS Class:
major
3'SS Sequence:
TTTGCTCTGCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TCTTTGTGCATG
Flanking Amino Acid:
PLLLFAVLCFWLPESARYDV
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
76.5
38.6
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
71.8
0.49
1
66.3
40.7
Minor 5ss
42.8
-0.8
3.2
65.4
40.1
Minor BPS
40.9
-0.8
2.4
50.82
44.3

Associated Gene:

Gene:
SVOP
Ensembl Gene ID:
ENSAPLG00000004265
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004386
13260999 - 13280061
19063