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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13268444_13269833_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13268444 - 13269833
Intron Length:
1390

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCATTTCTGACT
Flanking Amino Acid:
ARAKCILLIEVFWAIGTVFE
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
78.4
0.64
0.9
76
32.5
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
54
0.21
1.6
71.62
39.7

Associated Gene:

Gene:
SVOP
Ensembl Gene ID:
ENSAPLG00000004265
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004386
13260999 - 13280061
19063