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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13269898_13272505_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13269898 - 13272505
Intron Length:
2608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCACTCTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTTTCTCAATG
Flanking Amino Acid:
VGFGIGGVPQSVTLYAEFLP
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.3
75.9
35.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
81.8
0.72
0.8
75.8
32.5
Minor 5ss
36.6
-1.5
2.7
42.9
38.5
Minor BPS
69.8
0.48
1.5
75.15
37.2

Associated Gene:

Gene:
SVOP
Ensembl Gene ID:
ENSAPLG00000004265
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004386
13260999 - 13280061
19063