About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13273897_13274683_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13273897 - 13274683
Intron Length:
787

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTACCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTTTTTACCT
Flanking Amino Acid:
KLSIITGLAWMADAMEMMIL
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
1.1
82.3
37.3
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81.6
0.71
0.8
73.9
36.6
Minor 5ss
26.6
-2.7
3.7
34
41.5
Minor BPS
67.9
0.64
1.6
82.56
39.6

Associated Gene:

Gene:
SVOP
Ensembl Gene ID:
ENSAPLG00000004265
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004386
13260999 - 13280061
19063