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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13274770_13276368_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13274770 - 13276368
Intron Length:
1599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCACG
5'SS Class:
major
3'SS Sequence:
GTTTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAC
U12 Branch Point Sequence:
TGCACTAGAATT
Flanking Amino Acid:
VPKEFANPTDDTFMVEDAVE
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
64.1
41.7
Major BPS
56.2
0.16
1
64.7
31
Major PPT
84.8
0.78
0.7
77.7
36.7
Minor 5ss
34.4
-1.8
2.8
38
40.8
Minor BPS
46.9
-0.1
1.7
63.3
41

Associated Gene:

Gene:
SVOP
Ensembl Gene ID:
ENSAPLG00000004265
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004386
13260999 - 13280061
19063