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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13282763_13283802_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13282763 - 13283802
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGGACG
5'SS Class:
major
3'SS Sequence:
TATGTATTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGTAT
U12 Branch Point Sequence:
ATGGTGTAAACT
Flanking Amino Acid:
PIAQRKRRRRGLVPGLLNLG
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1
63.1
43
Major BPS
63.7
0.34
1.4
63.7
43.9
Major PPT
76.3
0.59
0.9
70.6
39.8
Minor 5ss
25.7
-2.8
3.1
30.8
42.9
Minor BPS
45
-0.3
2.3
64.94
46

Associated Gene:

Gene:
USP30
Ensembl Gene ID:
ENSAPLG00000015086
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015726
13282067 - 13292687
10621