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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13283986_13284447_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13283986 - 13284447
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTTAA
5'SS Class:
major
3'SS Sequence:
TCAATGTCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ACATTTTAAAAT
Flanking Amino Acid:
LSLTLLHLLRALSCQEVPED
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
73.2
33.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.3
0.43
0.9
66.2
40.5
Minor 5ss
38.5
-1.3
3
49.6
46.6
Minor BPS
49
0.01
1.7
63.47
41.1

Associated Gene:

Gene:
USP30
Ensembl Gene ID:
ENSAPLG00000015086
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015726
13282067 - 13292687
10621