About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13284552_13285410_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13284552 - 13285410
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTACA
5'SS Class:
strong_major
3'SS Sequence:
CTCTACTTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TTTCTCTAAATC
Flanking Amino Acid:
RWQISSFEEQDAHELFHVLT
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
78.6
29.8
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
69.9
0.45
0.9
65.7
34.4
Minor 5ss
30.6
-2.2
2.5
35
40.8
Minor BPS
64.1
0.42
1.6
75.09
35.7

Associated Gene:

Gene:
USP30
Ensembl Gene ID:
ENSAPLG00000015086
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015726
13282067 - 13292687
10621