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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13285510_13286265_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13285510 - 13286265
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCCCTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
AATCTTTTATCT
Flanking Amino Acid:
THLFDVHSLEQPEIIQKQIT
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1.1
80.1
30.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
79.4
0.66
0.7
74.3
24
Minor 5ss
42
-0.9
2.9
57.8
46.8
Minor BPS
57.4
0.31
1.5
72.58
38.2

Associated Gene:

Gene:
USP30
Ensembl Gene ID:
ENSAPLG00000015086
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015726
13282067 - 13292687
10621