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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13287442_13288545_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13287442 - 13288545
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
GTGTTGTTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CTGCAAATAATT
Flanking Amino Acid:
LSLSIPAAVWGRPLTLDHCL
Intron Amino Acid Position:
229

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
77.9
36.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
64.1
0.32
1.1
67.5
42.8
Minor 5ss
45.9
-0.4
2.5
54.6
42.8
Minor BPS
43.6
-0.4
2
60.71
42.6

Associated Gene:

Gene:
USP30
Ensembl Gene ID:
ENSAPLG00000015086
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015726
13282067 - 13292687
10621