About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13288633_13289206_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13288633 - 13289206
Intron Length:
574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTAGT
5'SS Class:
major
3'SS Sequence:
CCTTTGATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTCCCTTTGATT
Flanking Amino Acid:
KDVVCDNCTKIQAEGTLNGQ
Intron Amino Acid Position:
258

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
77.2
37.7
Major BPS
84
0.85
0.9
75
39.9
Major PPT
79.4
0.66
0.9
73.1
35.9
Minor 5ss
45.3
-0.5
2.6
59.8
39
Minor BPS
69
0.68
1.2
80.06
36.3

Associated Gene:

Gene:
USP30
Ensembl Gene ID:
ENSAPLG00000015086
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015726
13282067 - 13292687
10621