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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13289288_13290349_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13289288 - 13290349
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
AACTTGGCTGAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTGTATGGAACT
Flanking Amino Acid:
TFVKQLKLGKLPQCLCIHLQ
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
70.9
36.4
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
54.8
0.11
1.2
53
41
Minor 5ss
24.6
-2.9
3
28.8
43.6
Minor BPS
47.7
-0.1
2.2
73.53
43.4

Associated Gene:

Gene:
USP30
Ensembl Gene ID:
ENSAPLG00000015086
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015726
13282067 - 13292687
10621