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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13290570_13291238_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
13290570 - 13291238
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
AATTACTGAATT
Flanking Amino Acid:
TKDGIAVKPSDAEQTHSTKS
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
1
85.4
30.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
96.2
1.04
0.5
92.4
17.6
Minor 5ss
47.8
-0.2
2.5
68.9
41.7
Minor BPS
62.7
0.48
1.6
78.13
37.5

Associated Gene:

Gene:
USP30
Ensembl Gene ID:
ENSAPLG00000015086
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015726
13282067 - 13292687
10621