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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13291348_13292422_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13291348 - 13292422
Intron Length:
1075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTCATTT
Flanking Amino Acid:
TFPLAAFPECSSPVYLYRLM
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.8
1.06
0.7
81.4
32.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
86.5
0.82
0.7
78.5
35.5
Minor 5ss
32
-2.1
3.1
39.6
46.4
Minor BPS
62.3
0.47
1.8
83.64
37.8

Associated Gene:

Gene:
USP30
Ensembl Gene ID:
ENSAPLG00000015086
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015726
13282067 - 13292687
10621