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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13296977_13297069_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
13296977 - 13297069
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGGTGGCA
5'SS Class:
weak_major
3'SS Sequence:
CAGATGAACAGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGATGAA
U12 Branch Point Sequence:
TCTTGTTTGAGC
Flanking Amino Acid:
YLPGERPGISGKLHVFGKWH
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.1
0.12
1.1
46.5
37.7
Major BPS
51.5
0.04
1.2
43.5
39.2
Major PPT
42
-0.4
1.6
35.4
38.9
Minor 5ss
22.3
-3.2
3.4
20.6
37.7
Minor BPS
49.5
-0
2.1
64.69
42.1

Associated Gene:

Gene:
ALKBH2
Ensembl Gene ID:
ENSAPLG00000015118
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015749
13296376 - 13297540
1165