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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13298292_13298370_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13298292 - 13298370
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
CCCTGCTGATCC
Flanking Amino Acid:
KEFSKPYFMELMAFVAEERK
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
81.3
32.8
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
68.7
0.42
0.9
61.5
35
Minor 5ss
36.8
-1.5
3.5
55
49.2
Minor BPS
43.7
-0.5
2.1
50.27
46.5

Associated Gene:

Gene:
UNG
Ensembl Gene ID:
ENSAPLG00000015120
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015757
13298019 - 13300901
2883