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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13298467_13299128_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13298467 - 13299128
Intron Length:
662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
GCTCTGCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTATAATGAAGC
Flanking Amino Acid:
TWTQMCDIRDVKVVILGQDP
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
65.2
40.8
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
77.1
0.61
0.9
72.8
37.5
Minor 5ss
29.1
-2.4
3.1
35.7
41.3
Minor BPS
46.1
-0.3
2.1
62.87
41.7

Associated Gene:

Gene:
UNG
Ensembl Gene ID:
ENSAPLG00000015120
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015757
13298019 - 13300901
2883