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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13299227_13299869_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13299227 - 13299869
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCAG
5'SS Class:
major
3'SS Sequence:
TTCCTGCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CATAATTTAAAA
Flanking Amino Acid:
SVQKPVPPPPSLENIYKELS
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
62.2
43.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
74
0.54
0.8
65.4
36.2
Minor 5ss
36.2
-1.6
3.2
46.2
49.1
Minor BPS
50
-0
1.6
59.68
39.6

Associated Gene:

Gene:
UNG
Ensembl Gene ID:
ENSAPLG00000015120
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015757
13298019 - 13300901
2883