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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13300234_13300760_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13300234 - 13300760
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTACAGATT
5'SS Class:
major
3'SS Sequence:
TTACCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTCCTTTTACC
Flanking Amino Acid:
AQKKGSSIDRKRHHVLQTVH
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.9
0.35
1.1
66.9
44.1
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
80.8
0.69
0.8
75.8
32.5
Minor 5ss
36
-1.6
3.6
48
47.9
Minor BPS
69.6
0.6
1.6
80.33
34.2

Associated Gene:

Gene:
UNG
Ensembl Gene ID:
ENSAPLG00000015120
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015757
13298019 - 13300901
2883