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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13307661_13307847_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13307661 - 13307847
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAT
5'SS Class:
strong_major
3'SS Sequence:
CGTTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCCCAC
U12 Branch Point Sequence:
GATGCTCCCACT
Flanking Amino Acid:
MQSTSKWLITTC
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
85.9
25.1
Major BPS
50
0
1.2
61.8
35.9
Major PPT
80.7
0.69
0.9
76.9
37.3
Minor 5ss
41.9
-0.9
2.9
58.4
46.2
Minor BPS
40.7
-0.6
2.2
58.77
44.1

Associated Gene:

Gene:
ACACB
Ensembl Gene ID:
ENSAPLG00000015224
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046874
13303393 - 13325895
22503
ENSAPLT00000015957
13305413 - 13325895
20483