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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13309496_13309649_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
13309496 - 13309649
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
GGTGTGACCACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
CTGGGCTTAATT
Flanking Amino Acid:
AEELGACFRQVQAEAPGSPI
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
69.4
35.7
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
59.7
0.22
1
50.6
42.8
Minor 5ss
25.3
-2.8
3.2
32.7
42.3
Minor BPS
55.8
0.26
1.9
70.86
46.8

Associated Gene:

Gene:
ACACB
Ensembl Gene ID:
ENSAPLG00000015224
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046874
13303393 - 13325895
22503
ENSAPLT00000015957
13305413 - 13325895
20483