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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13310550_13310746_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
13310550 - 13310746
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCT
5'SS Class:
strong_major
3'SS Sequence:
GCTCTTTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
GCTTTCTCAATG
Flanking Amino Acid:
ARITSENPEEGFKPSSGTVQ
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
71.4
40.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
78
0.63
0.9
76.2
37.8
Minor 5ss
35.1
-1.7
3.1
48.4
47.3
Minor BPS
57.7
0.1
1.6
59.72
42.6

Associated Gene:

Gene:
ACACB
Ensembl Gene ID:
ENSAPLG00000015224
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046874
13303393 - 13325895
22503
ENSAPLT00000015957
13305413 - 13325895
20483