About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13313332_13313400_F


Intron Information:

Intron Rank:
16

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
13313332 - 13313400

Intron Length:
69

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTACCCCCT

5'SS Class:
major

3'SS Sequence:
CCCTCTCCCTAAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GAGACAT

U12 Branch Point Sequence:
CACGCTGAGACA

Flanking Amino Acid:
YTTYMKEEIDRYRITIGNKT

Intron Amino Acid Position:
570

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
65.3
0.36
1.3
57.4
47.3

Major BPS
46.8
-0.2
1.3
52.7
43.2

Major PPT
63.5
0.31
0.9
67.1
26.7

Minor 5ss
45
-0.5
3.2
66.7
44.2

Minor BPS
37.8
-0.9
2.2
41.6
40.4

Associated Gene:

Gene:
ACACB

Ensembl Gene ID:

Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

13303393 - 13325895
22503

13305413 - 13325895
20483