Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13314654_13314894_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

13314654 - 13314894

Intron Length:

241

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGAAAC

5'SS Class:

strong_major

3'SS Sequence:

CCTGCCCTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGCCGAA

U12 Branch Point Sequence:

CAGTGCCGAACC

Flanking Amino Acid:

SVLCRFPSQQIATVLDTHAA

Intron Amino Acid Position:

778

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.1

0.9

0.8

80.3

26.9

Major BPS

47.7

-0.1

1.3

44.1

40.8

Major PPT

76.3

0.59

0.8

31.5

Minor 5ss

28.3

-2.5

2.8

33.7

41.9

Minor BPS

43.7

-0.5

2.1

53.11

Associated Gene:

Gene:

ACACB

Ensembl Gene ID:

ENSAPLG00000015224

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046874

13303393 - 13325895

22503

ENSAPLT00000015957

13305413 - 13325895

20483