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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_13325670_13325768_F

Intron Information:

Intron Rank:
51
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13325670 - 13325768
Intron Length:
99

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TCATGCCTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
TCTTGCTTCATG
Flanking Amino Acid:
KRDYVLKHIRSLVQANPEVA
Intron Amino Acid Position:
2111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
77.5
0.62
0.9
73.6
36.8
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
50
-0.1
2.2
62.41
46.2

Associated Gene:

Gene:
ACACB
Ensembl Gene ID:
ENSAPLG00000015224
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015957
13305413 - 13325895
20483
ENSAPLT00000046874
13303393 - 13325895
22503